This is the primary source for software developer documentation for Cytoscape 3. If you add new pages or sections to the wiki, please include links to them below.

• Cytoscape Core Branch Management
• Importing Git Repos in Eclipse
• Launching Cytoscape from Eclipse
• Cytoscape App Store

• Cytoscape 3.0 App Development
• Cytoscape App Ladder

The original Cytoscape wiki contains hordes of old, outdated and just-plain-wrong pages. Visit with caution and only transfer over current and useful pages.